I’m in the process of starting a proper backup solution however over the years I’ve had a few copy-paste home directory from different systems as a quick and dirty solution. Now I have to pay my technical debt and remove the duplicates. I’m looking for a deduplication tool.

  • accept a destination directory
  • source locations should be deleted after the operation
  • if files content is the same then delete the redundant copy
  • if files content is different, move and change the name to avoid name collision I tried doing it in nautilus but it does not look at the files content, only the file name. Eg if two photos have the same content but different name then it will also create a redundant copy.

Edit: Some comments suggested using btrfs’ feature duperemove. This will replace the same file content with points to the same location. This is not what I intend, I intend to remove the redundant files completely.

Edit 2: Another quite cool solution is to use hardlinks. It will replace all occurances of the same data with a hardlink. Then the redundant directories can be traversed and whatever is a link can be deleted. The remaining files will be unique. I’m not going for this myself as I don’t trust my self to write a bug free implementation.

  • chtk@feddit.nl
    0·
    8 days ago

    jdupes is my go-to solution for file deduplication. It should be able to remove duplicate files. I don’t know how much control it gives you over which duplicate to remove though.

  • utopiah@lemmy.ml
    0·
    8 days ago

    I don’t actually know but I bet that’s relatively costly so I would at least try to be mindful of efficiency, e.g

    • use find to start only with large files, e.g > 1Gb (depends on your own threshold)
    • look for a “cheap” way to find duplicates, e.g exact same size (far from perfect yet I bet is sufficient is most cases)

    then after trying a couple of times

    • find a “better” way to avoid duplicates, e.g SHA1 (quite expensive)
    • lower the threshold to include more files, e.g >.1Gb

    and possibly heuristics e.g

    • directories where all filenames are identical, maybe based on locate/updatedb that is most likely already indexing your entire filesystems

    Why do I suggest all this rather than a tool? Because I be a lot of decisions have to be manually made.

    • utopiah@lemmy.ml
      0·
      8 days ago

      if you use rmlint as others suggested here is how to check for path of dupes

      jq -c '.[] | select(.type == "duplicate_file").path' rmlint.json

      • paris@lemmy.blahaj.zone
        0·
        7 days ago

        I was using Radarr/Sonarr to download files via qBittorrent and then hardlink them to an organized directory for Jellyfin, but I set up my container volume mappings incorrectly and it was only copying the files over, not hardlinking them. When I realized this, I fixed the volume mappings and ended up using fclones to deduplicate the existing files and it was amazing. It did exactly what I needed it to and it did it fast. Highly recommend fclones.

        I’ve used it on Windows as well, but I’ve had much more trouble there since I like to write the output to a file first to double check it before catting the information back into fclones to actually deduplicate the files it found. I think running everything as admin works but I don’t remember.

  • HumanPerson@sh.itjust.worksEnglish
    0·
    7 days ago

    I believe zfs has deduplication built in if you want a separate backup partition. Not sure about its reliability though. Personally I just have a script that keeps a backup and an oldbackup, and they are both fairly small. I keep a file in my home dir called excluded for things like linux ISOs that don’t need backed up.

      • deadbeef79000@lemmy.nz
        0·
        7 days ago

        ln creates a hard link, ln -s creates a symlink.

        So, yes, the hardlink tool effectively replaces a file’s duplicates with hard links automatically, as if you’d used ln manually.

  • biribiri11@lemmy.ml
    0·
    7 days ago

    As said previously, Borg is a full dedplicating incremental archiver complete with compression. You can use relative paths temporarily to build up your backups and a full backup history, then use something like pika to browse the archives to ensure a complete history.

      • biribiri11@lemmy.ml
        0·
        7 days ago

        Tbf you did start your post with

        I’m in the process of starting a proper backup

        So you’re going to end up with at least a few people talking about how to onboard your existing backups into a proper backup solution (like borg). Your bullet points can certainly probably be organized into a shell script with sync, but why? A proper backup solution with a full backup history is going to be way more useful than dumping all your files into a directory and renaming in case something clobbers. I don’t see the point in doing anything other than tarring your old backups and using borg import-tar (docs). It feels like you’re trying to go from one half-baked, odd backup solution to another, instead of just going with a full, complete solution.

  • JetpackJackson@feddit.de
    0·
    8 days ago

    Instead of trying to parse the old stuff, could you just run something like borg and then delete the old copypaste backup? Or are there other files there that you need to go through? I ask because I went through a similar thing switching my backups from rsync to borg

    • Agility0971@lemmy.worldOP
      0·
      7 days ago

      I had multiple systems which at some point were syncing with syncthing but over time I stopped using my desktop computer and syncthing service got unmaintained. I’ve had to remove the ssd of the old desktop so I yoinked the home directory and saved it into my laptop. As you can probably tell, a lot of stuff got duplicated and a lot of stuff got diverged over time. My idea is that I would merge everything into my laptops home directory, and rather then look at the diverged files manually as it would be less work. I don’t think doing a backup with all my redundant files will be a good idea as the initial backup will include other backups and a lot of duplicated files.

  • lemmyvore@feddit.nlEnglish
    0·
    7 days ago

    Use Borg Backup. It has built-in deduplication — it works with chunks not files and will recognize identical chunks and avoid storing them multiple times. It will deduplicate your files and will find duplicated chunks even in files you didn’t know had duplicates. You can continue to keep your files duplicated or clean them out, it doesn’t matter, the borg backups will be optimized either way.

    • FryAndBender@lemmy.world
      0·
      6 days ago

      Here are the stats from a backup of 1 server with approx 600gig

                         Original size      Compressed size    Deduplicated size

      This archive: 592.44 GB 553.58 GB 13.79 MB All archives: 14.81 TB 13.94 TB 599.58 GB

                         Unique chunks         Total chunks

      Chunk index: 2760965 19590945

      13meg… nice